mirror of
https://github.com/pocketpy/pocketpy
synced 2025-10-20 11:30:18 +00:00
687 lines
24 KiB
C++
687 lines
24 KiB
C++
/***************************************************************************
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* Copyright (c) Johan Mabille, Sylvain Corlay and Wolf Vollprecht *
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* Copyright (c) QuantStack *
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* *
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* Distributed under the terms of the BSD 3-Clause License. *
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* *
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* The full license is in the file LICENSE, distributed with this software. *
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****************************************************************************/
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#ifndef XTENSOR_CHUNKED_ARRAY_HPP
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#define XTENSOR_CHUNKED_ARRAY_HPP
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#include <array>
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#include <vector>
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#include "xarray.hpp"
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#include "xchunked_assign.hpp"
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namespace xt
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{
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/**
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* @defgroup xt_xchunked_array
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*
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* Chunked array container.
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* Defined in ``xtensor/xchunked_array.hpp``.
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*/
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/******************************
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* xchunked_array declaration *
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******************************/
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template <class chunk_storage>
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class xchunked_array;
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template <class chunk_storage>
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struct xcontainer_inner_types<xchunked_array<chunk_storage>>
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{
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using chunk_type = typename chunk_storage::value_type;
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using const_reference = typename chunk_type::const_reference;
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using reference = typename chunk_type::reference;
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using size_type = std::size_t;
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using storage_type = chunk_type;
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using temporary_type = xchunked_array<chunk_storage>;
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};
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template <class chunk_storage>
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struct xiterable_inner_types<xchunked_array<chunk_storage>>
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{
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using chunk_type = typename chunk_storage::value_type;
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using inner_shape_type = typename chunk_type::shape_type;
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using const_stepper = xindexed_stepper<xchunked_array<chunk_storage>, true>;
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using stepper = xindexed_stepper<xchunked_array<chunk_storage>, false>;
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};
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template <class chunk_storage>
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class xchunked_array : public xaccessible<xchunked_array<chunk_storage>>,
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public xiterable<xchunked_array<chunk_storage>>,
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public xchunked_semantic<xchunked_array<chunk_storage>>
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{
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public:
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using chunk_storage_type = chunk_storage;
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using chunk_type = typename chunk_storage::value_type;
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using grid_shape_type = typename chunk_storage::shape_type;
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using const_reference = typename chunk_type::const_reference;
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using reference = typename chunk_type::reference;
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using self_type = xchunked_array<chunk_storage>;
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using semantic_base = xchunked_semantic<self_type>;
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using iterable_base = xconst_iterable<self_type>;
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using const_stepper = typename iterable_base::const_stepper;
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using stepper = typename iterable_base::stepper;
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using inner_types = xcontainer_inner_types<self_type>;
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using size_type = typename inner_types::size_type;
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using storage_type = typename inner_types::storage_type;
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using value_type = typename storage_type::value_type;
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using pointer = value_type*;
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using const_pointer = const value_type*;
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using difference_type = std::ptrdiff_t;
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using shape_type = typename chunk_type::shape_type;
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using temporary_type = typename inner_types::temporary_type;
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using bool_load_type = xt::bool_load_type<value_type>;
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static constexpr layout_type static_layout = layout_type::dynamic;
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static constexpr bool contiguous_layout = false;
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using chunk_iterator = xchunk_iterator<self_type>;
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using const_chunk_iterator = xchunk_iterator<const self_type>;
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template <class S>
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xchunked_array(
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chunk_storage_type&& chunks,
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S&& shape,
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S&& chunk_shape,
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layout_type chunk_memory_layout = XTENSOR_DEFAULT_LAYOUT
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);
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~xchunked_array() = default;
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xchunked_array(const xchunked_array&) = default;
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xchunked_array& operator=(const xchunked_array&) = default;
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xchunked_array(xchunked_array&&) = default;
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xchunked_array& operator=(xchunked_array&&) = default;
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template <class E>
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xchunked_array(
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const xexpression<E>& e,
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chunk_storage_type&& chunks,
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layout_type chunk_memory_layout = XTENSOR_DEFAULT_LAYOUT
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);
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template <class E, class S>
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xchunked_array(
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const xexpression<E>& e,
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chunk_storage_type&& chunks,
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S&& chunk_shape,
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layout_type chunk_memory_layout = XTENSOR_DEFAULT_LAYOUT
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);
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template <class E>
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xchunked_array& operator=(const xexpression<E>& e);
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size_type dimension() const noexcept;
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const shape_type& shape() const noexcept;
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layout_type layout() const noexcept;
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bool is_contiguous() const noexcept;
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template <class... Idxs>
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reference operator()(Idxs... idxs);
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template <class... Idxs>
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const_reference operator()(Idxs... idxs) const;
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template <class It>
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reference element(It first, It last);
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template <class It>
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const_reference element(It first, It last) const;
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template <class S>
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bool broadcast_shape(S& s, bool reuse_cache = false) const;
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template <class S>
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bool has_linear_assign(const S& strides) const noexcept;
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template <class S>
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stepper stepper_begin(const S& shape) noexcept;
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template <class S>
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stepper stepper_end(const S& shape, layout_type) noexcept;
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template <class S>
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const_stepper stepper_begin(const S& shape) const noexcept;
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template <class S>
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const_stepper stepper_end(const S& shape, layout_type) const noexcept;
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const shape_type& chunk_shape() const noexcept;
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size_type grid_size() const noexcept;
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const grid_shape_type& grid_shape() const noexcept;
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chunk_storage_type& chunks();
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const chunk_storage_type& chunks() const;
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chunk_iterator chunk_begin();
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chunk_iterator chunk_end();
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const_chunk_iterator chunk_begin() const;
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const_chunk_iterator chunk_end() const;
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const_chunk_iterator chunk_cbegin() const;
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const_chunk_iterator chunk_cend() const;
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private:
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template <class... Idxs>
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using indexes_type = std::
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pair<std::array<std::size_t, sizeof...(Idxs)>, std::array<std::size_t, sizeof...(Idxs)>>;
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template <class... Idxs>
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using chunk_indexes_type = std::array<std::pair<std::size_t, std::size_t>, sizeof...(Idxs)>;
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template <std::size_t N>
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using static_indexes_type = std::pair<std::array<std::size_t, N>, std::array<std::size_t, N>>;
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using dynamic_indexes_type = std::pair<std::vector<std::size_t>, std::vector<std::size_t>>;
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template <class S1, class S2>
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void resize(S1&& shape, S2&& chunk_shape, layout_type chunk_memory_layout = XTENSOR_DEFAULT_LAYOUT);
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template <class... Idxs>
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indexes_type<Idxs...> get_indexes(Idxs... idxs) const;
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template <class Idx>
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std::pair<std::size_t, std::size_t> get_chunk_indexes_in_dimension(std::size_t dim, Idx idx) const;
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template <std::size_t... dims, class... Idxs>
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chunk_indexes_type<Idxs...> get_chunk_indexes(std::index_sequence<dims...>, Idxs... idxs) const;
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template <class T, std::size_t N>
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static_indexes_type<N> unpack(const std::array<T, N>& arr) const;
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template <class It>
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dynamic_indexes_type get_indexes_dynamic(It first, It last) const;
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shape_type m_shape;
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shape_type m_chunk_shape;
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chunk_storage_type m_chunks;
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};
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template <class E>
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constexpr bool is_chunked(const xexpression<E>& e);
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template <class E>
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constexpr bool is_chunked();
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/**
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* Creates an in-memory chunked array.
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*
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* This function returns an uninitialized ``xt::xchunked_array<xt::xarray<T>>``.
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*
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* @ingroup xt_xchunked_array
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*
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* @tparam T The type of the elements (e.g. double)
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* @tparam L The layout_type of the array
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*
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* @param shape The shape of the array
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* @param chunk_shape The shape of a chunk
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* @param chunk_memory_layout The layout of each chunk (default: XTENSOR_DEFAULT_LAYOUT)
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*
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* @return returns a ``xt::xchunked_array<xt::xarray<T>>`` with the given shape, chunk shape and memory
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* layout.
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*/
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template <class T, layout_type L = XTENSOR_DEFAULT_LAYOUT, class S>
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xchunked_array<xarray<xarray<T>>>
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chunked_array(S&& shape, S&& chunk_shape, layout_type chunk_memory_layout = XTENSOR_DEFAULT_LAYOUT);
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template <class T, layout_type L = XTENSOR_DEFAULT_LAYOUT, class S>
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xchunked_array<xarray<xarray<T>>> chunked_array(
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std::initializer_list<S> shape,
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std::initializer_list<S> chunk_shape,
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layout_type chunk_memory_layout = XTENSOR_DEFAULT_LAYOUT
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);
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/**
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* Creates an in-memory chunked array.
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*
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* This function returns a ``xt::xchunked_array<xt::xarray<T>>`` initialized from an expression.
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*
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* @ingroup xt_xchunked_array
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*
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* @tparam L The layout_type of the array
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*
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* @param e The expression to initialize the chunked array from
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* @param chunk_shape The shape of a chunk
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* @param chunk_memory_layout The layout of each chunk (default: XTENSOR_DEFAULT_LAYOUT)
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*
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* @return returns a ``xt::xchunked_array<xt::xarray<T>>`` from the given expression, with the given chunk
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* shape and memory layout.
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*/
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template <layout_type L = XTENSOR_DEFAULT_LAYOUT, class E, class S>
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xchunked_array<xarray<xarray<typename E::value_type>>>
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chunked_array(const xexpression<E>& e, S&& chunk_shape, layout_type chunk_memory_layout = XTENSOR_DEFAULT_LAYOUT);
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/**
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* Creates an in-memory chunked array.
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*
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* This function returns a ``xt::xchunked_array<xt::xarray<T>>`` initialized from an expression.
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*
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* @ingroup xt_xchunked_array
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*
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* @tparam L The layout_type of the array
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*
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* @param e The expression to initialize the chunked array from
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* @param chunk_memory_layout The layout of each chunk (default: XTENSOR_DEFAULT_LAYOUT)
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*
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* @return returns a ``xt::xchunked_array<xt::xarray<T>>`` from the given expression, with the
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* expression's chunk shape and the given memory layout.
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*/
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template <layout_type L = XTENSOR_DEFAULT_LAYOUT, class E>
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xchunked_array<xarray<xarray<typename E::value_type>>>
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chunked_array(const xexpression<E>& e, layout_type chunk_memory_layout = XTENSOR_DEFAULT_LAYOUT);
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/*******************************
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* chunk_helper implementation *
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*******************************/
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namespace detail
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{
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// Workaround for VS2015
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template <class E>
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using try_chunk_shape = decltype(std::declval<E>().chunk_shape());
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template <class E, template <class> class OP, class = void>
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struct chunk_helper_impl
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{
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using is_chunked = std::false_type;
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static const auto& chunk_shape(const xexpression<E>& e)
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{
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return e.derived_cast().shape();
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}
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template <class S1, class S2>
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static void
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resize(E& chunks, const S1& container_shape, const S2& chunk_shape, layout_type chunk_memory_layout)
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{
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chunks.resize(container_shape);
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for (auto& c : chunks)
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{
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c.resize(chunk_shape, chunk_memory_layout);
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}
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}
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};
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template <class E, template <class> class OP>
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struct chunk_helper_impl<E, OP, void_t<OP<E>>>
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{
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using is_chunked = std::true_type;
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static const auto& chunk_shape(const xexpression<E>& e)
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{
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return e.derived_cast().chunk_shape();
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}
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template <class S1, class S2>
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static void
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resize(E& chunks, const S1& container_shape, const S2& /*chunk_shape*/, layout_type /*chunk_memory_layout*/)
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{
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chunks.resize(container_shape);
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}
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};
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template <class E>
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using chunk_helper = chunk_helper_impl<E, try_chunk_shape>;
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}
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template <class E>
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constexpr bool is_chunked(const xexpression<E>&)
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{
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return is_chunked<E>();
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}
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template <class E>
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constexpr bool is_chunked()
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{
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using return_type = typename detail::chunk_helper<E>::is_chunked;
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return return_type::value;
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}
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template <class T, layout_type L, class S>
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inline xchunked_array<xarray<xarray<T>>>
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chunked_array(S&& shape, S&& chunk_shape, layout_type chunk_memory_layout)
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{
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using chunk_storage = xarray<xarray<T, L>>;
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return xchunked_array<chunk_storage>(
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chunk_storage(),
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std::forward<S>(shape),
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std::forward<S>(chunk_shape),
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chunk_memory_layout
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);
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}
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template <class T, layout_type L, class S>
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xchunked_array<xarray<xarray<T>>>
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chunked_array(std::initializer_list<S> shape, std::initializer_list<S> chunk_shape, layout_type chunk_memory_layout)
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{
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using sh_type = std::vector<std::size_t>;
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auto sh = xtl::forward_sequence<sh_type, std::initializer_list<S>>(shape);
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auto ch_sh = xtl::forward_sequence<sh_type, std::initializer_list<S>>(chunk_shape);
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return chunked_array<T, L, sh_type>(std::move(sh), std::move(ch_sh), chunk_memory_layout);
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}
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template <layout_type L, class E, class S>
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inline xchunked_array<xarray<xarray<typename E::value_type>>>
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chunked_array(const xexpression<E>& e, S&& chunk_shape, layout_type chunk_memory_layout)
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{
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using chunk_storage = xarray<xarray<typename E::value_type, L>>;
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return xchunked_array<chunk_storage>(e, chunk_storage(), std::forward<S>(chunk_shape), chunk_memory_layout);
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}
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template <layout_type L, class E>
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inline xchunked_array<xarray<xarray<typename E::value_type>>>
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chunked_array(const xexpression<E>& e, layout_type chunk_memory_layout)
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{
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using chunk_storage = xarray<xarray<typename E::value_type, L>>;
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return xchunked_array<chunk_storage>(e, chunk_storage(), chunk_memory_layout);
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}
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/*********************************
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* xchunked_array implementation *
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*********************************/
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template <class CS>
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template <class S>
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inline xchunked_array<CS>::xchunked_array(CS&& chunks, S&& shape, S&& chunk_shape, layout_type chunk_memory_layout)
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: m_chunks(std::move(chunks))
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{
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resize(std::forward<S>(shape), std::forward<S>(chunk_shape), chunk_memory_layout);
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}
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template <class CS>
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template <class E>
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inline xchunked_array<CS>::xchunked_array(const xexpression<E>& e, CS&& chunks, layout_type chunk_memory_layout)
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: xchunked_array(e, std::move(chunks), detail::chunk_helper<E>::chunk_shape(e), chunk_memory_layout)
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{
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}
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template <class CS>
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template <class E, class S>
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inline xchunked_array<CS>::xchunked_array(
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const xexpression<E>& e,
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CS&& chunks,
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S&& chunk_shape,
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layout_type chunk_memory_layout
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)
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: m_chunks(std::move(chunks))
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{
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resize(e.derived_cast().shape(), std::forward<S>(chunk_shape), chunk_memory_layout);
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semantic_base::assign_xexpression(e);
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}
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template <class CS>
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template <class E>
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inline auto xchunked_array<CS>::operator=(const xexpression<E>& e) -> self_type&
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{
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return semantic_base::operator=(e);
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}
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template <class CS>
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inline auto xchunked_array<CS>::dimension() const noexcept -> size_type
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{
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return m_shape.size();
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}
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template <class CS>
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inline auto xchunked_array<CS>::shape() const noexcept -> const shape_type&
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{
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return m_shape;
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}
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template <class CS>
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inline auto xchunked_array<CS>::layout() const noexcept -> layout_type
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{
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return static_layout;
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}
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template <class CS>
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inline bool xchunked_array<CS>::is_contiguous() const noexcept
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{
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return false;
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}
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template <class CS>
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template <class... Idxs>
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inline auto xchunked_array<CS>::operator()(Idxs... idxs) -> reference
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{
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auto ii = get_indexes(idxs...);
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auto& chunk = m_chunks.element(ii.first.cbegin(), ii.first.cend());
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return chunk.element(ii.second.cbegin(), ii.second.cend());
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}
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template <class CS>
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template <class... Idxs>
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inline auto xchunked_array<CS>::operator()(Idxs... idxs) const -> const_reference
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{
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auto ii = get_indexes(idxs...);
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auto& chunk = m_chunks.element(ii.first.cbegin(), ii.first.cend());
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return chunk.element(ii.second.cbegin(), ii.second.cend());
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}
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template <class CS>
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template <class It>
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inline auto xchunked_array<CS>::element(It first, It last) -> reference
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{
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auto ii = get_indexes_dynamic(first, last);
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auto& chunk = m_chunks.element(ii.first.begin(), ii.first.end());
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return chunk.element(ii.second.begin(), ii.second.end());
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}
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template <class CS>
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template <class It>
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inline auto xchunked_array<CS>::element(It first, It last) const -> const_reference
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{
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auto ii = get_indexes_dynamic(first, last);
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auto& chunk = m_chunks.element(ii.first.begin(), ii.first.end());
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return chunk.element(ii.second.begin(), ii.second.end());
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}
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template <class CS>
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template <class S>
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inline bool xchunked_array<CS>::broadcast_shape(S& s, bool) const
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{
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return xt::broadcast_shape(shape(), s);
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}
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template <class CS>
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template <class S>
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inline bool xchunked_array<CS>::has_linear_assign(const S&) const noexcept
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{
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return false;
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}
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template <class CS>
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template <class S>
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inline auto xchunked_array<CS>::stepper_begin(const S& shape) noexcept -> stepper
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{
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size_type offset = shape.size() - this->dimension();
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return stepper(this, offset);
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}
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template <class CS>
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template <class S>
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inline auto xchunked_array<CS>::stepper_end(const S& shape, layout_type) noexcept -> stepper
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{
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size_type offset = shape.size() - this->dimension();
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return stepper(this, offset, true);
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}
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template <class CS>
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template <class S>
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inline auto xchunked_array<CS>::stepper_begin(const S& shape) const noexcept -> const_stepper
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{
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size_type offset = shape.size() - this->dimension();
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return const_stepper(this, offset);
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}
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template <class CS>
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template <class S>
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inline auto xchunked_array<CS>::stepper_end(const S& shape, layout_type) const noexcept -> const_stepper
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{
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size_type offset = shape.size() - this->dimension();
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return const_stepper(this, offset, true);
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}
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template <class CS>
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inline auto xchunked_array<CS>::chunk_shape() const noexcept -> const shape_type&
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{
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return m_chunk_shape;
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}
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template <class CS>
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inline auto xchunked_array<CS>::grid_size() const noexcept -> size_type
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{
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return m_chunks.size();
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}
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template <class CS>
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inline auto xchunked_array<CS>::grid_shape() const noexcept -> const grid_shape_type&
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{
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return m_chunks.shape();
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}
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template <class CS>
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inline auto xchunked_array<CS>::chunks() -> chunk_storage_type&
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{
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return m_chunks;
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}
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template <class CS>
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inline auto xchunked_array<CS>::chunks() const -> const chunk_storage_type&
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{
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return m_chunks;
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}
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template <class CS>
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inline auto xchunked_array<CS>::chunk_begin() -> chunk_iterator
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{
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shape_type chunk_index(m_shape.size(), size_type(0));
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return chunk_iterator(*this, std::move(chunk_index), 0u);
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}
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template <class CS>
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inline auto xchunked_array<CS>::chunk_end() -> chunk_iterator
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{
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shape_type sh = xtl::forward_sequence<shape_type, const grid_shape_type>(grid_shape());
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return chunk_iterator(*this, std::move(sh), grid_size());
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}
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template <class CS>
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inline auto xchunked_array<CS>::chunk_begin() const -> const_chunk_iterator
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{
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shape_type chunk_index(m_shape.size(), size_type(0));
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return const_chunk_iterator(*this, std::move(chunk_index), 0u);
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}
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template <class CS>
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inline auto xchunked_array<CS>::chunk_end() const -> const_chunk_iterator
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{
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shape_type sh = xtl::forward_sequence<shape_type, const grid_shape_type>(grid_shape());
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return const_chunk_iterator(*this, std::move(sh), grid_size());
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}
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template <class CS>
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inline auto xchunked_array<CS>::chunk_cbegin() const -> const_chunk_iterator
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{
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return chunk_begin();
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}
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template <class CS>
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inline auto xchunked_array<CS>::chunk_cend() const -> const_chunk_iterator
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{
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return chunk_end();
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}
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template <class CS>
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template <class S1, class S2>
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inline void xchunked_array<CS>::resize(S1&& shape, S2&& chunk_shape, layout_type chunk_memory_layout)
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{
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// compute chunk number in each dimension (shape_of_chunks)
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std::vector<std::size_t> shape_of_chunks(shape.size());
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std::transform(
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shape.cbegin(),
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shape.cend(),
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chunk_shape.cbegin(),
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shape_of_chunks.begin(),
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[](auto s, auto cs)
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{
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std::size_t cn = s / cs;
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if (s % cs > 0)
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{
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cn += std::size_t(1); // edge_chunk
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}
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return cn;
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}
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);
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detail::chunk_helper<CS>::resize(m_chunks, shape_of_chunks, chunk_shape, chunk_memory_layout);
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m_shape = xtl::forward_sequence<shape_type, S1>(shape);
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m_chunk_shape = xtl::forward_sequence<shape_type, S2>(chunk_shape);
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}
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template <class CS>
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template <class... Idxs>
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inline auto xchunked_array<CS>::get_indexes(Idxs... idxs) const -> indexes_type<Idxs...>
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{
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auto chunk_indexes_packed = get_chunk_indexes(std::make_index_sequence<sizeof...(Idxs)>(), idxs...);
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return unpack(chunk_indexes_packed);
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}
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template <class CS>
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template <class Idx>
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inline std::pair<std::size_t, std::size_t>
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xchunked_array<CS>::get_chunk_indexes_in_dimension(std::size_t dim, Idx idx) const
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{
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std::size_t index_of_chunk = static_cast<size_t>(idx) / m_chunk_shape[dim];
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std::size_t index_in_chunk = static_cast<size_t>(idx) - index_of_chunk * m_chunk_shape[dim];
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return std::make_pair(index_of_chunk, index_in_chunk);
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}
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template <class CS>
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template <std::size_t... dims, class... Idxs>
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inline auto xchunked_array<CS>::get_chunk_indexes(std::index_sequence<dims...>, Idxs... idxs) const
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-> chunk_indexes_type<Idxs...>
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{
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chunk_indexes_type<Idxs...> chunk_indexes = {{get_chunk_indexes_in_dimension(dims, idxs)...}};
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return chunk_indexes;
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}
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template <class CS>
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template <class T, std::size_t N>
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inline auto xchunked_array<CS>::unpack(const std::array<T, N>& arr) const -> static_indexes_type<N>
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{
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std::array<std::size_t, N> arr0;
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std::array<std::size_t, N> arr1;
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for (std::size_t i = 0; i < N; ++i)
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{
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arr0[i] = std::get<0>(arr[i]);
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arr1[i] = std::get<1>(arr[i]);
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}
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return std::make_pair(arr0, arr1);
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}
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template <class CS>
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template <class It>
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inline auto xchunked_array<CS>::get_indexes_dynamic(It first, It last) const -> dynamic_indexes_type
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{
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auto size = static_cast<std::size_t>(std::distance(first, last));
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std::vector<std::size_t> indexes_of_chunk(size);
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std::vector<std::size_t> indexes_in_chunk(size);
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for (std::size_t dim = 0; dim < size; ++dim)
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{
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auto chunk_index = get_chunk_indexes_in_dimension(dim, *first++);
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indexes_of_chunk[dim] = chunk_index.first;
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indexes_in_chunk[dim] = chunk_index.second;
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}
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return std::make_pair(indexes_of_chunk, indexes_in_chunk);
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}
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}
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#endif
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